Domain ID e4c3iB4

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb2_6
UID: 001508865
Type: Automatic domain
Parent: e1twfB1
Range: B:762-798,B:912-1040
Ligands: MG
PDB: 4c3i
PDB Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135
UniProt: P22138
Hsap BLAST neighbor: Q9H9Y6
Species: Saccharomyces cerevisiae

Structure of domain e4c3iB4

Domains in the same chain:

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e4c3iB1 B:12-209,B:401-547 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3iB3 B:210-400 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4c3iB7 B:548-646 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4c3iB2 B:647-761 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4c3iB4 B:762-798,B:912-1040 cradle loop barrel RIFT-related double psi
e4c3iB5 B:799-911 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4c3iB6 B:1041-1203 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e4c3iA8 A:1-141,A:172-275,A:312-463 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4c3iA3 A:464-505,A:581-665 cradle loop barrel RIFT-related double psi
e4c3iA9 A:506-580 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c3iA7 A:666-826 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4c3iA4 A:827-1053 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4c3iA6 A:1054-1180 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c3iA2 A:1181-1234,A:1545-1663 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4c3iA1 A:1235-1261,A:1498-1544 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3iA5 A:1262-1352,A:1438-1497 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3iB1 B:12-209,B:401-547 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3iB3 B:210-400 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4c3iB7 B:548-646 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4c3iB2 B:647-761 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4c3iB4 B:762-798,B:912-1040 cradle loop barrel RIFT-related double psi
e4c3iB5 B:799-911 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4c3iB6 B:1041-1203 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3iC1 C:30-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4c3iC2 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4c3iD1 D:12-49,D:80-100 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4c3iE2 E:1-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e4c3iE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4c3iF1 F:55-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4c3iG2 G:8-126 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4c3iG1 G:127-174,G:214-316 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4c3iH1 H:3-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4c3iI1 I:2-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4c3iI2 I:68-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4c3iJ1 J:1-69 HTH RPB10 RPB10
e4c3iK1 K:40-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4c3iL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4c3iM1 M:8-114 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains
e4c3iN1 N:23-180 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains

Structural contacts of domain e4c3iB4 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4c3iA4 B:x,y,z->A:X,Y,Z second helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4c3iA7 B:x,y,z->A:X,Y,Z first helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4c3iA3 B:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e4c3iJ1 B:X,Y,Z->J:x,y,z RPB10 Interaction Interface Pymol
e4c3iN1 B:X,Y,Z->N:x,y,z triple barrel Interaction Interface Pymol
e4c3iC1 B:X,Y,Z->C:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e4c3iC2 B:X,Y,Z->C:x,y,z Insert subdomain of RNA polymerase alpha subunit Interaction Interface Pymol
e4c3iI2 B:X,Y,Z->I:x,y,z Rubredoxin-related Interaction Interface Pymol
e4c3iK1 B:X,Y,Z->K:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol