Domain ID e4ce4c2

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: TGS
UID: 001125242
Type: Automatic domain
Parent: e1tkeA2
Range: c:62-135
PDB: 4ce4
PDB Description: MRPL39
UniProt: F1SHP6
Hsap BLAST neighbor: Q9NYK5
Species:

Structure of domain e4ce4c2

Domains in the same chain:

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e4ce4c1 c:34-61,c:136-325 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain
e4ce4c2 c:62-135 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e4ce401 0:38-135 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4ce411 1:82-139 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4ce421 2:86-161 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4ce431 3:65-123 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4ce451 5:79-146 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4ce461 6:13-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4ce471 7:53-95 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4ce481 8:103-162 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4ce491 9:64-99 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4ce4b1 b:145-336 Immunoglobulin-like beta-sandwich Immunoglobulin-related PEBP-like
e4ce4c1 c:34-61,c:136-325 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain
e4ce4c2 c:62-135 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ce4D1 D:75-178 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ce4D2 D:179-274 SH3 SH3 SH3
e4ce4E1 E:148-355 cradle loop barrel RIFT-related Alanine racemase-C
e4ce4F1 F:59-282 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4ce4h1 h:35-233 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e4ce4h2 h:234-306 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4ce4i1 i:104-264 Cystatin-like NTF2-like NTF2-like
e4ce4I1 I:94-150 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e4ce4l1 l:91-166 Glucose permease domain IIB-like eIF1-like eIF1-like
e4ce4N1 N:1-147 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4ce4O1 O:32-145 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4ce4P1 P:9-177 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e4ce4Q1 Q:55-208 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e4ce4R1 R:9-128 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4ce4S1 S:79-172 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ce4T1 T:87-205 SH3 SH3 SH3
e4ce4u1 u:67-163 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e4ce4U1 U:10-132 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4ce4V1 V:99-207 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4ce4W1 W:70-179 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4ce4X1 X:22-108 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4ce4Y1 Y:53-155 SH3 SH3 SH3

Structural contacts of domain e4ce4c2 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ce4W1 c:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e4ce451 c:x,y,z->5:X,Y,Z Rubredoxin-related Interaction Interface Pymol