Domain ID e4ckbD1

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  • A: a+b complex topology
  • X: Protein kinase/SAICAR synthase/ATP-grasp
  • H: Protein kinase/SAICAR synthase/ATP-grasp
  • T: ATP-grasp
  • F: MCEL_GT_NTPase
UID: 001283693
Type: Automatic domain
Parent: e4ckcD2
Range: D:219-385
Ligands: GTP
PDB: 4ckb
PDB Description: MRNA-CAPPING ENZYME CATALYTIC SUBUNIT
UniProt: P04298
Species: Vaccinia virus

Structure of domain e4ckbD1

Domains in the same chain:

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e4ckbD3 D:1-218 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e4ckbD1 D:219-385 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e4ckbD4 D:386-520 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ckbD2 D:521-844 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases

Domains in the same PDB:

e4ckbA3 A:1-218 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e4ckbA1 A:219-385 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e4ckbA4 A:386-520 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ckbA2 A:521-844 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4ckbB1 B:1-287 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4ckbD3 D:1-218 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e4ckbD1 D:219-385 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e4ckbD4 D:386-520 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ckbD2 D:521-844 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4ckbE1 E:1-287 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases

Structural contacts of domain e4ckbD1 of H-group "Protein kinase/SAICAR synthase/ATP-grasp":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ckbD4 D:X-1,Y,Z->D:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4ckbD3 D:X-1,Y,Z-1->D:x,y,z mRNA triphosphatase CET1-related Interaction Interface Pymol