Domain ID e4cmpB5

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  • A: few secondary structure elements
  • X: His-Me finger endonucleases
  • H: His-Me finger endonucleases
  • T: His-Me finger endonucleases
  • F: HNH_4
UID: 001705374
Type: Automatic domain
Parent: e4un3B4
Range: B:773-924
PDB: 4cmp
PDB Description: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1
UniProt: Q99ZW2
Species:

Structure of domain e4cmpB5

Domains in the same chain:

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e4cmpB1 B:4-57,B:718-766,B:925-1102 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cmpB3 B:58-447,B:502-713 CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe
e4cmpB5 B:773-924 His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases
e4cmpB2 B:1137-1200 SSHS domain SSHS domain in CRISPR-associated endonuclease Cas9 SSHS domain in CRISPR-associated endonuclease Cas9
e4cmpB4 B:1201-1363 CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain

Domains in the same PDB:

e4cmpA2 A:4-57,A:718-766,A:925-1102 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cmpA4 A:58-447,A:503-567,A:587-714 CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe
e4cmpA5 A:775-924 His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases
e4cmpA3 A:1137-1200 SSHS domain SSHS domain in CRISPR-associated endonuclease Cas9 SSHS domain in CRISPR-associated endonuclease Cas9
e4cmpA1 A:1201-1363 CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain
e4cmpB1 B:4-57,B:718-766,B:925-1102 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cmpB3 B:58-447,B:502-713 CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe
e4cmpB5 B:773-924 His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases
e4cmpB2 B:1137-1200 SSHS domain SSHS domain in CRISPR-associated endonuclease Cas9 SSHS domain in CRISPR-associated endonuclease Cas9
e4cmpB4 B:1201-1363 CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain

Structural contacts of domain e4cmpB5 of H-group "His-Me finger endonucleases":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4cmpB5 B:x,y,z->B:-X,-Y-1,Z His-Me finger endonucleases Interaction Interface Pymol
e4cmpB5 B:-X,-Y-1,Z->B:x,y,z His-Me finger endonucleases Interaction Interface Pymol
e4cmpA2 B:x,y,z->A:-X-1/2,Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e4cmpA4 B:-X,-Y-1,Z-1->A:x,y,z CRISPR-associated endonuclease Cas9 alpha-helical lobe Interaction Interface Pymol