Domain ID e4cr2U2

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  • A: a+b three layers
  • X: Cytidine deaminase-like
  • H: Cytidine deaminase-like
  • T: Cytidine deaminase-like
  • F: JAB
UID: 001295891
Type: Manual and representative domain
Range: U:5-176
PDB: 4cr2
PDB Description: 26S PROTEASOME REGULATORY SUBUNIT RPN8
UniProt: Q08723
Hsap BLAST neighbor: P51665
Species: Saccharomyces cerevisiae

Structure of domain e4cr2U2

Domains in the same chain:

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e4cr2U2 U:5-176 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like
e4cr2U1 U:188-235,U:259-308 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain

Domains in the same PDB:

e4cr211 1:-9-196 Ntn/PP2C Ntn Proteasome subunits
e4cr221 2:1-223 Ntn/PP2C Ntn Proteasome subunits
e4cr231 3:-8-196 Ntn/PP2C Ntn Proteasome subunits
e4cr241 4:-1-197 Ntn/PP2C Ntn Proteasome subunits
e4cr251 5:1-212 Ntn/PP2C Ntn Proteasome subunits
e4cr261 6:-9-213 Ntn/PP2C Ntn Proteasome subunits
e4cr271 7:-8-225 Ntn/PP2C Ntn Proteasome subunits
e4cr2A1 A:10-252 Ntn/PP2C Ntn Proteasome subunits
e4cr2B1 B:1-250 Ntn/PP2C Ntn Proteasome subunits
e4cr2C1 C:2-246 Ntn/PP2C Ntn Proteasome subunits
e4cr2D1 D:3-244 Ntn/PP2C Ntn Proteasome subunits
e4cr2E1 E:9-251 Ntn/PP2C Ntn Proteasome subunits
e4cr2F1 F:2-234 Ntn/PP2C Ntn Proteasome subunits
e4cr2G1 G:4-248 Ntn/PP2C Ntn Proteasome subunits
e4cr2H1 H:174-360 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4cr2H2 H:361-456 Histone-like Histone-related AAA+ ATPase lid domain
e4cr2I2 I:75-163 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cr2I3 I:164-351 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4cr2I1 I:352-436 Histone-like Histone-related AAA+ ATPase lid domain
e4cr2J3 J:67-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cr2J2 J:129-318 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4cr2J1 J:319-396 Histone-like Histone-related AAA+ ATPase lid domain
e4cr2K4 K:84-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cr2K2 K:155-341 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4cr2K3 K:342-428 Histone-like Histone-related AAA+ ATPase lid domain
e4cr2L3 L:67-162 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cr2L1 L:163-352 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4cr2L2 L:352-427 Histone-like Histone-related AAA+ ATPase lid domain
e4cr2M3 M:74-85,M:113-163 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cr2M2 M:164-352 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4cr2M1 M:352-434 Histone-like Histone-related AAA+ ATPase lid domain
e4cr2N3 N:4-306 Repetitive alpha hairpins 26S proteasome subunit Rpn2 N-terminal domain 26S proteasome subunit Rpn2 N-terminal domain
e4cr2N2 N:307-754 Repetitive alpha hairpins Proteasome/cyclosome (PC) repeat Proteasome/cyclosome (PC) repeat
e4cr2N1 N:755-787,N:860-925 26S proteasome subunit Rpn2 C-terminal domain 26S proteasome subunit Rpn2 C-terminal domain 26S proteasome subunit Rpn2 C-terminal domain
e4cr2O1 O:1-278 Repetitive alpha hairpins ARM repeat ARM repeat
e4cr2O2 O:279-356 HTH HTH winged
e4cr2O3 O:357-387 26S proteasome regulatory subunits C-terminal helices 26S proteasome regulatory subunit RPN9 C-terminal helix 26S proteasome regulatory subunit RPN9 C-terminal helix
e4cr2P3 P:28-329 Repetitive alpha hairpins ARM repeat ARM repeat
e4cr2P2 P:330-407 HTH HTH winged
e4cr2P1 P:408-442 26S proteasome regulatory subunits C-terminal helices 26S proteasome regulatory subunit RPN5 C-terminal helix 26S proteasome regulatory subunit RPN5 C-terminal helix
e4cr2Q1 Q:1-328 Repetitive alpha hairpins ARM repeat ARM repeat
e4cr2Q4 Q:326-405 HTH HTH winged
e4cr2Q3 Q:405-431 26S proteasome regulatory subunits C-terminal helices 26S proteasome regulatory subunit RPN6 C-termial helix 26S proteasome regulatory subunit RPN6 C-termial helix
e4cr2R2 R:23-319 Repetitive alpha hairpins ARM repeat ARM repeat
e4cr2R3 R:320-396 HTH HTH winged
e4cr2R1 R:397-422 26S proteasome regulatory subunits C-terminal helices 26S proteasome regulatory subunit RPN7 C-terminal helix 26S proteasome regulatory subunit RPN7 C-terminal helix
e4cr2S4 S:126-369 Repetitive alpha hairpins ARM repeat ARM repeat
e4cr2S2 S:370-452 HTH HTH winged
e4cr2S3 S:453-478 26S proteasome regulatory subunits C-terminal helices 26S proteasome regulatory subunit RPN3 C-terminal helix 26S proteasome regulatory subunit RPN3 C-terminal helix
e4cr2T1 T:1-183 Repetitive alpha hairpins ARM repeat ARM repeat
e4cr2T2 T:184-272 HTH HTH winged
e4cr2U2 U:5-176 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like
e4cr2U1 U:188-235,U:259-308 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain
e4cr2V2 V:23-205 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like
e4cr2V1 V:206-298 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain
e4cr2W1 W:1-197 HAD domain-like HAD domain-related vWA-like
e4cr2X1 X:7-133 PH domain-like PH domain-like PH domain-like
e4cr2Z2 Z:49-365 Repetitive alpha hairpins 26S proteasome subunit Rpn2 N-terminal domain 26S proteasome subunit Rpn2 N-terminal domain
e4cr2Z1 Z:359-625,Z:736-910 Repetitive alpha hairpins Proteasome/cyclosome (PC) repeat Proteasome/cyclosome (PC) repeat

Structural contacts of domain e4cr2U2 of H-group "Cytidine deaminase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4cr2U2 U:x,y,z->V:X,Y,Z Cytidine deaminase-like Interaction Interface Pymol
e4cr2P1 U:X,Y,Z->P:x,y,z 26S proteasome regulatory subunit RPN5 C-terminal helix Interaction Interface Pymol
e4cr2W1 U:x,y,z->W:X,Y,Z HAD domain-related Interaction Interface Pymol
e4cr2W1 U:X,Y,Z->L:x,y,z HAD domain-related Interaction Interface Pymol