Domain ID e4cxcO1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 001313803
Type: Automatic domain
Parent: e2uubK1
Range: O:15-151
PDB: 4cxc
PDB Description:
Hsap BLAST neighbor: P62263
Species:

Structure of domain e4cxcO1

Domains in the same chain:

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e4cxcO1 O:15-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4cxca1 a:2-97 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4cxcb1 b:4-83 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4cxcB2 B:21-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4cxcB1 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4cxcc1 c:8-69 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cxcC3 C:202-278 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4cxcd1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4cxcD1 D:2-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4cxcD2 D:92-213 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4cxcE2 E:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4cxcE3 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cxcE1 E:176-258 SH3 SH3 SH3
e4cxcf1 f:91-151 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4cxcF1 F:17-204 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4cxcg1 g:2-315 beta-propeller-like beta-propeller 7-bladed
e4cxcG1 G:1-232 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4cxcH1 H:4-107 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4cxcH2 H:108-194 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4cxcI1 I:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4cxcK1 K:2-95 HTH HTH winged
e4cxcM1 M:11-130 Bacillus chorismate mutase-like L30e-like L30e-like
e4cxcN2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4cxcN1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4cxcO1 O:15-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cxcR1 R:2-122 HTH HTH FF domain
e4cxcT1 T:2-144 HTH HTH winged
e4cxcU1 U:18-118 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4cxcV1 V:1-83 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e4cxcW1 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4cxcW2 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4cxcX1 X:7-140 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4cxcY1 Y:4-125 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4cxcZ1 Z:40-115 HTH HTH winged

Structural contacts of domain e4cxcO1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4cxcB2 O:X,Y,Z->B:x,y,z 40S ribosomal protein S3A N-terminal domain Interaction Interface Pymol
e4cxca1 O:x,y,z->a:X,Y,Z LIM domain-like Interaction Interface Pymol
e4cxcc1 O:x,y,z->c:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4cxcF1 O:X,Y,Z->F:x,y,z Ribosomal protein S7 Interaction Interface Pymol