ECOD: domain e4d8pA2

Domain ID e4d8pA2

A: a+b two layers
X: MHC antigen-recognition domain
H: MHC antigen-recognition domain
T: MHC antigen-recognition domain
F: MHC_II_alpha

UID:	000148660
Type:	Automatic domain
Parent:	e1hdmA2
Range:	A:1B-81
Ligands:	GOL
PDB:	4d8p
PDB Description:	HLA-DQA1 protein
UniProt:	L8E864
Hsap BLAST neighbor:	P01909
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4d8pA2	A:1B-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4d8pA1	A:82-182	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4d8pA2	A:1B-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4d8pA1	A:82-182	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d8pB2	B:-29-92	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4d8pB1	B:93-190	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d8pC2	C:0-80	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4d8pC1	C:81-181	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d8pD3	D:-29-92	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4d8pD2	D:93-190	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4d8pA2 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1hdmA2	A:X,Y,Z->B:x,y,z	MHC antigen-recognition domain	Interaction Interface Pymol
e4d8pB1	A:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4d8pA1	A:x,y,z->A:-X+1,Y,-Z+1	Immunoglobulin-related	Interaction Interface Pymol
e4d8pA1	A:-X+1,Y,-Z+1->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4d8pA1	A:X-1/2,Y-1/2,Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4d8pC2	A:X-1/2,Y-1/2,Z->C:x,y,z	MHC antigen-recognition domain	Interaction Interface Pymol