Domain ID e4d98A2

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  • A: a/b three-layered sandwiches
  • X: Phosphorylase/hydrolase-like
  • H: Peptidyl-tRNA hydrolase-like
  • T: Peptidyl-tRNA hydrolase-like
  • F: PNP_UDP_1
UID: 001223065
Type: Automatic domain
Parent: e3pnpA1
Range: A:2-232
Ligands: CL SO4
PDB: 4d98
PDB Description: Purine nucleoside phosphorylase deoD-type
UniProt: O34925
Species: Bacillus subtilis

Structure of domain e4d98A2

Structural contacts of domain e4d98A2 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4d98B2 A:x,y,z->B:-Y,X-Y,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98B2 A:X,Y,Z->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98A2 A:x,y,z->A:Y-1/3,X+1/3,-Z+1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98A2 A:Y-1/3,X+1/3,-Z+1/3->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98B2 A:x,y,z->B:-X+Y-1/3,-X+1/3,Z+1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98B2 A:-X,-X+Y,-Z+1->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98A2 A:x,y,z->A:-Y,X-Y,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98A2 A:-Y,X-Y,Z->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4d98B2 A:-X,-X+Y,-Z->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol