| UID: | 001165747 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1jatB1 |
| Range: | A:-1-1046 |
| PDB: | 4ddi |
| PDB Description: | Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1 |
| UniProt: | Q96FW1 |
| Hsap BLAST neighbor: | P62837 |
| Species: | Homo sapiens |
Structure of domain e4ddiA4
Domains in the same chain:
| e4ddiA4 | A:-1-1046 | UBC-like | UBC-like | UBC-like |
| e4ddiA5 | A:1047-1271 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
Domains in the same PDB:
| e4ddiA4 | A:-1-1046 | UBC-like | UBC-like | UBC-like |
| e4ddiA5 | A:1047-1271 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4ddiB2 | B:-1-1046 | UBC-like | UBC-like | UBC-like |
| e4ddiB1 | B:1047-1271 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4ddiC4 | C:-1-1046 | UBC-like | UBC-like | UBC-like |
| e4ddiC5 | C:1047-1271 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4ddiD1 | D:1-76 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4ddiE1 | E:1-76 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4ddiF1 | F:1-76 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4ddiG1 | G:1-74 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4ddiH1 | H:1-74 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4ddiI1 | I:1-74 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
Structural contacts of domain e4ddiA4 of H-group "UBC-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4ddiB2 | A:X,Y,Z->B:x,y,z | UBC-like | Interaction Interface Pymol |
| e4ddiG1 | A:X,Y,Z->G:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4ddiC5 | A:X,Y,Z->C:x,y,z | Cysteine proteinases | Interaction Interface Pymol |
| e4ddiC4 | A:X,Y,Z->C:x,y,z | UBC-like | Interaction Interface Pymol |
| e4ddiA5 | A:x,y,z->A:-X+1/2,Y-1/2,-Z+1 | Cysteine proteinases | Interaction Interface Pymol |
| e4ddiI1 | A:X,Y,Z->I:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4ddiB1 | A:X-1/2,Y+1/2,Z->B:x,y,z | Cysteine proteinases | Interaction Interface Pymol |
