ECOD: domain e4ddtA3

Domain ID e4ddtA3

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: Unmapped domains

UID:	001005572
Type:	Manual and representative domain
Range:	A:619-645
Ligands:	ZN
PDB:	4ddt
PDB Description:	Reverse gyrase
UniProt:	O51934
Species:	Thermotoga maritima

Domains in the same chain:

Download Pymol

e4ddtA2	A:2-52	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ddtA7	A:56-285	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddtA4	A:282-535	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddtA8	A:537-621,A:642-712	HAD domain-like	HAD domain-related	Toprim domain
e4ddtA3	A:619-645	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4ddtA6	A:714-773,A:1007-1103	HTH	HTH	winged
e4ddtA1	A:773-812,A:938-1001	LigT-like	Prokaryotic type I DNA topoisomerase beta-barrel domain	Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddtA5	A:813-939	HTH	HTH	winged

Domains in the same PDB:

e4ddtA2	A:2-52	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ddtA7	A:56-285	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddtA4	A:282-535	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddtA8	A:537-621,A:642-712	HAD domain-like	HAD domain-related	Toprim domain
e4ddtA3	A:619-645	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4ddtA6	A:714-773,A:1007-1103	HTH	HTH	winged
e4ddtA1	A:773-812,A:938-1001	LigT-like	Prokaryotic type I DNA topoisomerase beta-barrel domain	Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddtA5	A:813-939	HTH	HTH	winged

Structural contacts of domain e4ddtA3 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ddtA7	A:x,y,z->A:-X,Y,-Z-1	P-loop domains-related	Interaction Interface Pymol
e4ddtA7	A:-X,Y,-Z-1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol