Domain ID e4ddxA3

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  • A: a/b three-layered sandwiches
  • X: HAD domain-like
  • H: HAD domain-related
  • T: Toprim domain
  • F: Toprim
UID: 001572168
Type: Automatic domain
Parent: e1gl9C3
Range: A:537-713
Ligands: ZN
PDB: 4ddx
PDB Description: Reverse gyrase
UniProt: O51934
Species: Thermotoga maritima

Structure of domain e4ddxA3

Domains in the same chain:

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e4ddxA7 A:2-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ddxA8 A:55-285 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddxA2 A:284-536 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddxA3 A:537-713 HAD domain-like HAD domain-related Toprim domain
e4ddxA5 A:714-773,A:1007-1103 HTH HTH winged
e4ddxA6 A:773-813,A:939-1006 LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddxA4 A:813-938 HTH HTH winged

Domains in the same PDB:

e4ddxA7 A:2-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ddxA8 A:55-285 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddxA2 A:284-536 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddxA3 A:537-713 HAD domain-like HAD domain-related Toprim domain
e4ddxA5 A:714-773,A:1007-1103 HTH HTH winged
e4ddxA6 A:773-813,A:939-1006 LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddxA4 A:813-938 HTH HTH winged
e4ddxB4 B:2-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ddxB5 B:55-285 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddxB8 B:282-535 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddxB3 B:536-621,B:642-713 HAD domain-like HAD domain-related Toprim domain
e4ddxB6 B:619-645 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4ddxB7 B:714-773,B:1007-1103 HTH HTH winged
e4ddxB1 B:773-812,B:938-1006 LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddxB2 B:813-939 HTH HTH winged

Structural contacts of domain e4ddxA3 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ddxA6 A:x,y,z->A:-X+1,Y-1/2,-Z Prokaryotic type I DNA topoisomerase beta-barrel domain Interaction Interface Pymol