Domain ID e4dfmA6

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 001168738
Type: Automatic domain
Parent: e2hhvA2
Range: A:423-600
Ligands: 0L6 EDO
PDB: 4dfm
PDB Description: DNA POLYMERASE I, THERMOSTABLE
UniProt: P19821
Hsap BLAST neighbor: Q7Z5Q5
Species: Thermus aquaticus

Structure of domain e4dfmA6

Structural contacts of domain e4dfmA6 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dfmA7 A:x,y,z->A:-X,-X+Y,-Z+1/3 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfmA7 A:-X,-X+Y,-Z+1/3->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfmA8 A:x,y,z->A:X-Y,-Y,-Z-1/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dfmA6 A:x,y,z->A:X-Y,-Y,-Z-1/3 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dfmA6 A:X-Y,-Y,-Z-1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dfmA8 A:X-Y,-Y,-Z-1/3->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dfmA5 A:Y,X-1,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4dfmA7 A:x,y,z->A:-Y,X-Y,Z+1/3 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfmA8 A:x,y,z->A:-Y,X-Y,Z+1/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol