Domain ID e4dfmA8

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 001168740
Type: Automatic domain
Parent: e2hhvA3
Range: A:601-630,A:750-832
Ligands: 0L6 EDO MG
PDB: 4dfm
PDB Description: DNA POLYMERASE I, THERMOSTABLE
UniProt: P19821
Hsap BLAST neighbor: Q7Z5Q5
Species: Thermus aquaticus

Structure of domain e4dfmA8

Structural contacts of domain e4dfmA8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dfmA6 A:x,y,z->A:X-Y,-Y,-Z-1/3 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dfmA6 A:X-Y,-Y,-Z-1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dfmA7 A:x,y,z->A:-X,-X+Y,-Z-2/3 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfmA8 A:x,y,z->A:-X,-X+Y,-Z-2/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dfmA8 A:-X,-X+Y,-Z-2/3->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dfmA7 A:-X,-X+Y,-Z-2/3->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfmA5 A:-Y,X-Y-1,Z+1/3->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4dfmA6 A:-Y,X-Y,Z+1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol