| UID: | 001168740 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2hhvA3 |
| Range: | A:601-630,A:750-832 |
| Ligands: | 0L6 EDO MG |
| PDB: | 4dfm |
| PDB Description: | DNA POLYMERASE I, THERMOSTABLE |
| UniProt: | P19821 |
| Hsap BLAST neighbor: | Q7Z5Q5 |
| Species: | Thermus aquaticus |
Structure of domain e4dfmA8
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e4dfmA8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4dfmA6 | A:x,y,z->A:X-Y,-Y,-Z-1/3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
| e4dfmA6 | A:X-Y,-Y,-Z-1/3->A:x,y,z | "fingers" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
| e4dfmA7 | A:x,y,z->A:-X,-X+Y,-Z-2/3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | Interaction Interface Pymol |
| e4dfmA8 | A:x,y,z->A:-X,-X+Y,-Z-2/3 | Adenylyl and guanylyl cyclase catalytic domain-like | Interaction Interface Pymol |
| e4dfmA8 | A:-X,-X+Y,-Z-2/3->A:x,y,z | Adenylyl and guanylyl cyclase catalytic domain-like | Interaction Interface Pymol |
| e4dfmA7 | A:-X,-X+Y,-Z-2/3->A:x,y,z | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | Interaction Interface Pymol |
| e4dfmA5 | A:-Y,X-Y-1,Z+1/3->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e4dfmA6 | A:-Y,X-Y,Z+1/3->A:x,y,z | "fingers" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
