Domain ID e4dg1A3

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: RNase_H
UID: 000150819
Type: Automatic domain
Parent: e1mu2A3
Range: A:429-549
Ligands: EDO GOL MG
PDB: 4dg1
PDB Description: REVERSE TRANSCRIPTASE P66 SUBUNIT
UniProt: P03366
Hsap BLAST neighbor: P10266
Species:

Structure of domain e4dg1A3

Domains in the same chain:

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e4dg1A7 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dg1A6 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4dg1A5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4dg1A3 A:429-549 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4dg1A7 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dg1A6 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4dg1A5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4dg1A3 A:429-549 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dg1B2 B:1-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dg1B1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4dg1B3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4dg1A3 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dg1B3 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4dg1B1 A:X,Y,Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e4dg1A7 A:-X+1/2,Y-1/2,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dg1A3 A:x,y,z->A:-X+1,Y,-Z+1 Ribonuclease H-like Interaction Interface Pymol
e4dg1A3 A:-X+1,Y,-Z+1->A:x,y,z Ribonuclease H-like Interaction Interface Pymol