Domain ID e4dh9K1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 000997584
Type: Automatic domain
Parent: e2uubK1
Range: K:1-119
Ligands: MG
PDB: 4dh9
PDB Description:
Hsap BLAST neighbor: P82912
Species:

Structure of domain e4dh9K1

Domains in the same chain:

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e4dh9K1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4dh9C2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dh9C1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dh9E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dh9E3 E:73-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dh9F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dh9G1 G:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dh9H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dh9H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dh9J1 J:1-98 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dh9K1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dh9L1 L:4-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dh9N1 N:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dh9O2 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dh9P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dh9R2 R:20-87 HTH HTH tri-helical
e4dh9T1 T:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4dh9Y1 Y:2-133 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e4dh9K1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dh9R2 K:X,Y,Z->R:x,y,z HTH Interaction Interface Pymol
e4dh9G1 K:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol