| UID: | 001307639 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1tffA1 |
| Range: | I:36-276 |
| PDB: | 4dhj |
| PDB Description: | Ubiquitin thioesterase otubain-like |
| UniProt: | Q9XVR6 |
| Hsap BLAST neighbor: | Q96FW1 |
| Species: | Caenorhabditis elegans |
Structure of domain e4dhjI1
Domains in the same chain:
| e4dhjI1 | I:36-276 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
Domains in the same PDB:
| e4dhjA1 | A:28-275 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4dhjB1 | B:501-576 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4dhjC1 | C:1-142 | UBC-like | UBC-like | UBC-like |
| e4dhjD1 | D:501-573 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4dhjE1 | E:52-275 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4dhjF1 | F:501-574 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4dhjG1 | G:1-142 | UBC-like | UBC-like | UBC-like |
| e4dhjH1 | H:501-574 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4dhjI1 | I:36-276 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4dhjJ1 | J:501-574 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4dhjK1 | K:1-142 | UBC-like | UBC-like | UBC-like |
| e4dhjL1 | L:38-276 | Cysteine proteinases-like | Cysteine proteinases | Cysteine proteinases |
| e4dhjM1 | M:501-574 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4dhjN1 | N:1-142 | UBC-like | UBC-like | UBC-like |
Structural contacts of domain e4dhjI1 of H-group "Cysteine proteinases":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4dhjJ1 | I:X,Y,Z->J:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4dhjC1 | I:X,Y,Z->C:x,y,z | UBC-like | Interaction Interface Pymol |
| e4dhjK1 | I:X,Y,Z->K:x,y,z | UBC-like | Interaction Interface Pymol |
| e4dhjL1 | I:-X-1/2,-Y-1,Z-1/2->L:x,y,z | Cysteine proteinases | Interaction Interface Pymol |
| e4dhjK1 | I:X-1/2,-Y-3/2,-Z+1->K:x,y,z | UBC-like | Interaction Interface Pymol |
| e4dhjM1 | I:-X-3/2,-Y-1,Z-1/2->M:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4dhjE1 | I:-X-3/2,-Y-1,Z-1/2->E:x,y,z | Cysteine proteinases | Interaction Interface Pymol |
