ECOD: domain e4dleA9

Domain ID e4dleA9

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: Taq-exonuc

UID:	001168761
Type:	Automatic domain
Parent:	e1qtmA4
Range:	A:294-422
PDB:	4dle
PDB Description:	DNA POLYMERASE I, THERMOSTABLE
UniProt:	P19821
Species:	Thermus aquaticus

Domain
In chain context
In PDB context

Structure of domain e4dleA9

Domains in the same chain:

Download Pymol

e4dleA9	A:294-422	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4dleA10	A:423-600	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dleA12	A:601-630,A:750-832	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4dleA11	A:626-749	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4dleA9	A:294-422	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4dleA10	A:423-600	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dleA12	A:601-630,A:750-832	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4dleA11	A:626-749	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4dleA9 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4dleA10	A:x,y,z->A:Y,X-1,-Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e4dleA11	A:X-Y-1,-Y-1,-Z-1/3->A:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol