Domain ID e4dpgD3

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  • A: a+b three layers
  • X: Class II aaRS and biotin synthetases
  • H: Class II aaRS and biotin synthetases
  • T: Class II aaRS and biotin synthetases
  • F: tRNA-synt_2
UID: 001244202
Type: Automatic domain
Parent: e1e1oA2
Range: D:217-575
Ligands: ALA APC LYS MG
PDB: 4dpg
PDB Description: Lysine--tRNA ligase
UniProt: Q15046
Hsap BLAST neighbor: Q15046
Species: Homo sapiens

Structure of domain e4dpgD3

Domains in the same chain:

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e4dpgD4 D:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgD3 D:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases

Domains in the same PDB:

e4dpgA4 A:71-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgA3 A:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgB4 B:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgB3 B:217-576 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgC4 C:71-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgC3 C:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgD4 D:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgD3 D:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgE4 E:72-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgE3 E:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgF4 F:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgF3 F:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgG4 G:72-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgG3 G:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgH4 H:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgH3 H:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases

Structural contacts of domain e4dpgD3 of H-group "Class II aaRS and biotin synthetases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dpgC3 D:x,y,z->C:X,Y,Z Class II aaRS and biotin synthetases Interaction Interface Pymol
e4dpgC4 D:x,y,z->C:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4dpgE4 D:x,y,z->E:X,Y-1,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4dpgH4 D:x,y,z->H:X,Y,Z-1 Nucleic acid-binding proteins Interaction Interface Pymol
e4dpgF4 D:X,Y,Z->F:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4dpgG3 D:x,y,z->G:X-1,Y,Z-1 Class II aaRS and biotin synthetases Interaction Interface Pymol