Domain ID e4dpgD4

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: tRNA_anti-codon
UID: 001244203
Type: Automatic domain
Parent: e1b8aA1
Range: D:71-216
PDB: 4dpg
PDB Description: Lysine--tRNA ligase
UniProt: Q15046
Hsap BLAST neighbor: Q15046
Species: Homo sapiens

Structure of domain e4dpgD4

Domains in the same chain:

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e4dpgD4 D:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgD3 D:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases

Domains in the same PDB:

e4dpgA4 A:71-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgA3 A:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgB4 B:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgB3 B:217-576 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgC4 C:71-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgC3 C:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgD4 D:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgD3 D:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgE4 E:72-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgE3 E:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgF4 F:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgF3 F:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgG4 G:72-215 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgG3 G:216-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e4dpgH4 H:71-216 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dpgH3 H:217-575 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases

Structural contacts of domain e4dpgD4 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dpgC3 D:x,y,z->C:X,Y,Z Class II aaRS and biotin synthetases Interaction Interface Pymol
e4dpgE4 D:x,y,z->E:X,Y-1,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4dpgH3 D:X,Y,Z->H:x,y,z Class II aaRS and biotin synthetases Interaction Interface Pymol
e4dpgB4 D:x,y,z->B:X,Y-1,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4dpgF3 D:x,y,z->F:X,Y-1,Z Class II aaRS and biotin synthetases Interaction Interface Pymol