Domain ID e4dqiA7

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 001173824
Type: Automatic domain
Parent: e2hhvA2
Range: A:469-643
Ligands: DCP SO4
PDB: 4dqi
PDB Description: DNA POLYMERASE I
UniProt: Q5KWC1
Hsap BLAST neighbor: Q7Z5Q5
Species:

Structure of domain e4dqiA7

Domains in the same chain:

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e4dqiA2 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqiA7 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqiA5 A:644-668,A:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqiA6 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4dqiA2 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqiA7 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqiA5 A:644-668,A:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqiA6 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4dqiD10 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqiD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqiD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqiD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4dqiA7 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dqiD11 A:-X+5/2,-Y,Z-1/2->D:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dqiD12 A:-X+5/2,-Y,Z-1/2->D:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dqiD12 A:-X+5/2,-Y-1,Z-1/2->D:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dqiD10 A:-X+5/2,-Y-1,Z-1/2->D:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4dqiD10 A:X,Y,Z->D:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4dqiD10 A:x,y,z->D:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e4dqiA2 A:-X+2,Y-1/2,-Z+1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol