Domain ID e4dqiD9

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 001236922
Type: Automatic domain
Parent: e2hhvA3
Range: D:644-668,D:793-876
Ligands: DCP MG
PDB: 4dqi
PDB Description: DNA POLYMERASE I
UniProt: Q5KWC1
Hsap BLAST neighbor: O75417
Species:

Structure of domain e4dqiD9

Domains in the same chain:

Download Pymol

e4dqiD10 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqiD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqiD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqiD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4dqiA2 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqiA7 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqiA5 A:644-668,A:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqiA6 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4dqiD10 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqiD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqiD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqiD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4dqiD9 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dqiD10 D:x,y,z->D:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e4dqiD11 D:x,y,z->D:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dqiA6 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dqiA5 D:x,y,z->A:X-1/2,-Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dqiA6 D:x,y,z->A:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol