Domain ID e4dr2E1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000153808
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
Ligands: MG
PDB: 4dr2
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4dr2E1

Domains in the same chain:

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e4dr2E2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dr2E1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4dr2B1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4dr2C1 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dr2C2 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dr2D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4dr2E2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dr2E1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dr2F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dr2G1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dr2H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dr2H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dr2I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dr2J1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dr2K2 K:11-127 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dr2L1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dr2M1 M:2-119 HhH/H2TH H2TH H2TH
e4dr2N1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dr2O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dr2P1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dr2Q1 Q:2-102 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dr2R1 R:16-88 HTH HTH tri-helical
e4dr2S1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4dr2T1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4dr2E1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dr2H1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4dr2H2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e4dr2D1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e4dr2E1 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dr2E2 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e4dr2E1 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dr2E2 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol