ECOD: domain e4dr3E3

Domain ID e4dr3E3

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: Ribosomal_S5_C

UID:	001277413
Type:	Automatic domain
Parent:	e1pkpA2
Range:	E:73-154
Ligands:	MG
PDB:	4dr3
PDB Description:	30S RIBOSOMAL PROTEIN S5
UniProt:	Q5SHQ5
Species:

Domains in the same chain:

Download Pymol

e4dr3E4	E:5-72	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e4dr3E3	E:73-154	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4dr3B1	B:7-127,B:157-240	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e4dr3C2	C:1-105	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e4dr3C1	C:106-206	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e4dr3D1	D:2-209	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e4dr3E4	E:5-72	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e4dr3E3	E:73-154	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4dr3F1	F:1-101	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e4dr3G1	G:1-154	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e4dr3H1	H:1-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e4dr3H2	H:67-138	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e4dr3I1	I:2-128	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4dr3J1	J:1-96	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e4dr3K2	K:11-126	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4dr3L1	L:1-121	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4dr3M1	M:2-119	HhH/H2TH	H2TH	H2TH
e4dr3N1	N:1-59	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4dr3O2	O:2-88	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e4dr3P1	P:1-83	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e4dr3Q1	Q:2-78	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4dr3R2	R:19-88	HTH	HTH	tri-helical
e4dr3S1	S:2-81	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e4dr3T1	T:1-92	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e4dr3E3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4dr3H1	E:X,Y,Z->H:x,y,z	Ribosomal protein S8, N-terminal domain	Interaction Interface Pymol
e4dr3H2	E:X,Y,Z->H:x,y,z	Ribosomal protein S8, C-terminal domain	Interaction Interface Pymol
e4dr3E4	E:x,y,z->E:Y,X,-Z	dsRNA-binding domain-like	Interaction Interface Pymol
e4dr3E3	E:x,y,z->E:Y,X,-Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e4dr3E3	E:Y,X,-Z->E:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e4dr3E4	E:Y,X,-Z->E:x,y,z	dsRNA-binding domain-like	Interaction Interface Pymol
e4dr3D1	E:x,y,z->D:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol