Domain ID e4dr6D1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549763
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: MG ZN
PDB: 4dr6
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species:

Structure of domain e4dr6D1

Domains in the same chain:

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e4dr6D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e4dr6B1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4dr6C2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dr6C1 C:106-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dr6D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4dr6E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dr6E3 E:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dr6F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dr6G1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dr6H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dr6H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dr6I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dr6J1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dr6K2 K:11-127 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dr6L1 L:1-121 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dr6M1 M:2-119 HhH/H2TH H2TH H2TH
e4dr6N1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dr6O2 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dr6P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dr6Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dr6R2 R:18-88 HTH HTH tri-helical
e4dr6S1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4dr6T1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4dr6D1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dr6E3 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dr6E4 D:X,Y,Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e4dr6H1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol