Domain ID e4duyI1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S9
UID: 001549768
Type: Automatic domain
Parent: e4v4vAI1
Range: I:2-128
Ligands: MG
PDB: 4duy
PDB Description: RIBOSOMAL PROTEIN S9
UniProt: P80374
Hsap BLAST neighbor: P82933
Species:

Structure of domain e4duyI1

Domains in the same chain:

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e4duyI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4duyB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4duyC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4duyC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4duyD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4duyE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4duyE2 E:74-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4duyF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4duyG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4duyH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4duyH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4duyI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4duyJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4duyK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4duyL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4duyM1 M:2-119 HhH/H2TH H2TH H2TH
e4duyN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4duyO1 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4duyP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4duyQ1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4duyR1 R:19-88 HTH HTH tri-helical
e4duyS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4duyT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4duyI1 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4duyG1 I:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol
e4duyJ1 I:X,Y,Z->J:x,y,z Ribosomal protein S10 Interaction Interface Pymol
e4duyN1 I:X,Y,Z->N:x,y,z LIM domain-like Interaction Interface Pymol