Domain ID e4dv1M1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: H2TH
  • T: H2TH
  • F: Ribosomal_S13
UID: 001552363
Type: Automatic domain
Parent: e4v4vAM1
Range: M:2-119
Ligands: MG
PDB: 4dv1
PDB Description: RIBOSOMAL PROTEIN S13
UniProt: P80377
Hsap BLAST neighbor: P62269
Species:

Structure of domain e4dv1M1

Domains in the same chain:

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e4dv1M1 M:2-119 HhH/H2TH H2TH H2TH

Domains in the same PDB:

e4dv1B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4dv1C2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dv1C1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dv1D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4dv1E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dv1E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv1F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dv1G1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dv1H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dv1H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dv1I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv1J1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dv1K2 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dv1L1 L:1-121 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv1M1 M:2-119 HhH/H2TH H2TH H2TH
e4dv1N1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dv1O2 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dv1P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dv1Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv1R2 R:19-88 HTH HTH tri-helical
e4dv1S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4dv1T1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4dv1M1 of H-group "H2TH":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dv1S1 M:X,Y,Z->S:x,y,z Ribosomal protein S19 Interaction Interface Pymol