Domain ID e4dv3E3

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001277421
Type: Automatic domain
Parent: e1pkpA2
Range: E:73-154
Ligands: MG
PDB: 4dv3
PDB Description: RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4dv3E3

Domains in the same chain:

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e4dv3E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dv3E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4dv3B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4dv3C2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dv3C1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dv3D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4dv3E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dv3E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv3F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dv3G1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dv3H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dv3H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dv3I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv3J1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dv3K2 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dv3L1 L:1-121 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv3M1 M:2-119 HhH/H2TH H2TH H2TH
e4dv3N1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dv3O2 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dv3P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dv3Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv3R2 R:19-88 HTH HTH tri-helical
e4dv3S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4dv3T1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4dv3E3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dv3H1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4dv3H2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e4dv3D1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e4dv3E3 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dv3E4 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e4dv3E3 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dv3E4 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol