ECOD: domain e4dv5M1

Domain ID e4dv5M1

A: alpha arrays
X: HhH/H2TH
H: H2TH
T: H2TH
F: Ribosomal_S13

UID:	001552378
Type:	Automatic domain
Parent:	e4v4vAM1
Range:	M:2-119
Ligands:	MG
PDB:	4dv5
PDB Description:	RIBOSOMAL PROTEIN S13
UniProt:	P80377
Hsap BLAST neighbor:	P62269
Species:

Domains in the same chain:

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e4dv5M1	M:2-119	HhH/H2TH	H2TH	H2TH

Domains in the same PDB:

e4dv5B1	B:7-127,B:157-240	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e4dv5C2	C:1-105	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e4dv5C1	C:106-206	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e4dv5D1	D:2-209	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e4dv5E4	E:5-72	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e4dv5E3	E:73-154	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4dv5F1	F:1-101	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e4dv5G1	G:1-154	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e4dv5H1	H:1-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e4dv5H2	H:67-138	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e4dv5I1	I:2-128	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4dv5J1	J:1-96	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e4dv5K2	K:11-126	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4dv5L1	L:1-121	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4dv5M1	M:2-119	HhH/H2TH	H2TH	H2TH
e4dv5N1	N:1-59	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4dv5O2	O:2-88	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e4dv5P1	P:1-83	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e4dv5Q1	Q:2-78	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4dv5R2	R:19-88	HTH	HTH	tri-helical
e4dv5S1	S:2-81	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e4dv5T1	T:1-92	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e4dv5M1 of H-group "H2TH":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4dv5S1	M:X,Y,Z->S:x,y,z	Ribosomal protein S19	Interaction Interface Pymol