ECOD: domain e4ebkB3

Domain ID e4ebkB3

A: alpha bundles
X: Four-helical up-and-down bundle
H: HEPN
T: Nucleotidyltransferase substrate binding subunit/domain
F: Ant-IIb_sub-bd

UID:	001833085
Type:	Automatic and representative domain
Parent:	e4ebjA2
Range:	B:122-251
Ligands:	CL EDO IOD TOY
PDB:	4ebk
PDB Description:	AMINOGLYCOSIDE NUCLEOTIDYLTRANSFERASE
UniProt:	D0E7M2
Species:	Pseudomonas aeruginosa

Domain
In chain context
In PDB context

Structure of domain e4ebkB3

Domains in the same chain:

Download Pymol

e4ebkB2	B:-20-120	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e4ebkB3	B:122-251	Four-helical up-and-down bundle	HEPN	Nucleotidyltransferase substrate binding subunit/domain

Domains in the same PDB:

e4ebkA2	A:-20-120	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e4ebkA1	A:135-251	Four-helical up-and-down bundle	HEPN	Nucleotidyltransferase substrate binding subunit/domain
e4ebkB2	B:-20-120	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e4ebkB3	B:122-251	Four-helical up-and-down bundle	HEPN	Nucleotidyltransferase substrate binding subunit/domain

Structural contacts of domain e4ebkB3 of H-group "HEPN":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ebkA2	B:x,y,z->A:X,Y,Z	Nucleotidyltransferase	Interaction Interface Pymol
e4ebkA1	B:x,y,z->A:X,Y,Z	HEPN	Interaction Interface Pymol
e4ebkA1	B:X-1/2,-Y-1/2,-Z->A:x,y,z	HEPN	Interaction Interface Pymol
e4ebkB2	B:x,y,z->B:X-1/2,-Y-1/2,-Z	Nucleotidyltransferase	Interaction Interface Pymol
e4ebkB3	B:x,y,z->B:X-1/2,-Y-1/2,-Z	HEPN	Interaction Interface Pymol
e4ebkB3	B:X-1/2,-Y-1/2,-Z->B:x,y,z	HEPN	Interaction Interface Pymol