ECOD: domain e4emzC2

Domain ID e4emzC2

A: a+b three layers
X: Regulatory factor Nef
H: Regulatory factor Nef
T: Regulatory factor Nef
F: F-protein

UID:	001175822
Type:	Automatic domain
Parent:	e1efnB1
Range:	C:7-23,C:55-152,C:178-204
PDB:	4emz
PDB Description:	PROTEIN NEF
UniProt:	Q90VU7
Species:	Human immunodeficiency virus 1

Domain
In chain context
In PDB context

Structure of domain e4emzC2

Domains in the same chain:

Download Pymol

e4emzC2	C:7-23,C:55-152,C:178-204	Regulatory factor Nef	Regulatory factor Nef	Regulatory factor Nef

Domains in the same PDB:

e4emzA4	A:159-273,A:385-423	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e4emzA3	A:273-385	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e4emzB2	B:5-23,B:59-150,B:178-204	Regulatory factor Nef	Regulatory factor Nef	Regulatory factor Nef
e4emzC2	C:7-23,C:55-152,C:178-204	Regulatory factor Nef	Regulatory factor Nef	Regulatory factor Nef
e4emzM4	M:159-273,M:385-423	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e4emzM3	M:273-385	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f

Structural contacts of domain e4emzC2 of H-group "Regulatory factor Nef":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4emzM3	C:X,Y,Z->M:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4emzM4	C:X,Y,Z->M:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4emzA3	C:X,Y,Z->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4emzB2	C:X,Y-1,Z->B:x,y,z	Regulatory factor Nef	Interaction Interface Pymol
e4emzA3	C:-X-1,Y-1/2,-Z+1/2->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4emzM4	C:-X-1,Y-1/2,-Z+1/2->M:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4emzM3	C:-X-1,Y-1/2,-Z+1/2->M:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4emzB2	C:-X-1,Y-1/2,-Z+1/2->B:x,y,z	Regulatory factor Nef	Interaction Interface Pymol
e4emzB2	C:X-1/2,-Y-1/2,-Z->B:x,y,z	Regulatory factor Nef	Interaction Interface Pymol