Domain ID e4esvD1

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DnaB_C
UID: 001812252
Type: Automatic domain
Parent: e4esvC2
Range: D:160-441
Ligands: ALF CA GDP
PDB: 4esv
PDB Description: Replicative helicase
UniProt: Q9X4C9
Species: Geobacillus stearothermophilus

Structure of domain e4esvD1

Domains in the same chain:

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e4esvD2 D:8-159 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvD1 D:160-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e4esvA4 A:6-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvA3 A:176-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvB4 B:6-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvB3 B:176-445 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvC1 C:8-159 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvC2 C:160-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvD2 D:8-159 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvD1 D:160-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvE3 E:13-153 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvE2 E:154-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvF2 F:9-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvF1 F:176-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvG2 G:8-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvG1 G:176-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvH2 H:9-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvH1 H:176-445 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvI2 I:9-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvI1 I:176-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvJ3 J:14-153 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvJ2 J:154-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvK2 K:8-175 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvK1 K:176-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4esvL3 L:10-153 DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related
e4esvL2 L:154-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e4esvD1 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4esvC1 D:x,y,z->C:X,Y,Z DnaB helicase N-terminal domain-related Interaction Interface Pymol
e4esvC2 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e4esvE2 D:X,Y,Z->E:x,y,z P-loop domains-related Interaction Interface Pymol
e4esvH2 D:x,y,z->H:-X+1,Y,-Z+1/2 DnaB helicase N-terminal domain-related Interaction Interface Pymol
e4esvH1 D:x,y,z->H:-X+1,Y,-Z+1/2 P-loop domains-related Interaction Interface Pymol
e4esvG2 D:x,y,z->G:-X+1,Y,-Z+1/2 DnaB helicase N-terminal domain-related Interaction Interface Pymol