ECOD: domain e4ezhB2

Domain ID e4ezhB2

A: few secondary structure elements
X: Glucocorticoid receptor-like
H: LIM domain-like
T: LIM domain-like
F: KDM6_GATAL

UID:	001413929
Type:	Automatic domain
Parent:	e2xueA3
Range:	B:1559-1622
Ligands:	ZN
PDB:	4ezh
PDB Description:	Lysine-specific demethylase 6B
UniProt:	Q5NCY0
Hsap BLAST neighbor:	O15054
Species:	Mus musculus

Domain
In chain context
In PDB context

Structure of domain e4ezhB2

Domains in the same chain:

Download Pymol

e4ezhB1	B:1157-1292,B:1324-1487	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e4ezhB3	B:1488-1558,B:1623-1638	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases
e4ezhB2	B:1559-1622	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like

Domains in the same PDB:

e4ezhA1	A:1157-1301,A:1323-1487	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e4ezhA2	A:1488-1559	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases
e4ezhA3	A:1559-1638	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ezhB1	B:1157-1292,B:1324-1487	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e4ezhB3	B:1488-1558,B:1623-1638	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases
e4ezhB2	B:1559-1622	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like

Structural contacts of domain e4ezhB2 of H-group "LIM domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ezhA1	B:x,y,z->A:X,Y,Z	Double-stranded beta-helix	Interaction Interface Pymol
e4ezhA3	B:x,y,z->A:-X-1/2,-Y,Z-1/2	LIM domain-like	Interaction Interface Pymol