ECOD: domain e4f1nB3

Domain ID e4f1nB3

A: a/b three-layered sandwiches
X: Middle domain in Argonaute homologs
H: Middle domain in Argonaute homologs
T: Middle domain in Argonaute homologs
F: Unmapped domains

UID:	001381376
Type:	Automatic domain
Parent:	e4f1nA4
Range:	B:735-836,B:866-952
PDB:	4f1n
PDB Description:	KpAGO
UniProt:	A7TMA9
Species:

Domains in the same chain:

Download Pymol

e4f1nB5	B:220-267,B:395-494,B:674-734	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB4	B:268-281,B:302-351,B:383-397	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB6	B:495-593,B:658-673	SH3	SH3	SH3
e4f1nB3	B:735-836,B:866-952	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4f1nB2	B:953-1251	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e4f1nA2	A:217-267,A:399-494,A:675-734	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nA1	A:268-398	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nA3	A:495-674	SH3	SH3	SH3
e4f1nA4	A:735-952	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4f1nA5	A:953-1251	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4f1nB5	B:220-267,B:395-494,B:674-734	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB4	B:268-281,B:302-351,B:383-397	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB6	B:495-593,B:658-673	SH3	SH3	SH3
e4f1nB3	B:735-836,B:866-952	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4f1nB2	B:953-1251	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Structural contacts of domain e4f1nB3 of H-group "Middle domain in Argonaute homologs":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4f1nB3	B:x,y,z->B:-Y+2,X-Y,Z-1/3	Middle domain in Argonaute homologs	Interaction Interface Pymol
e4f1nB2	B:-Y+2,X-Y,Z-1/3->B:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e4f1nB3	B:-Y+2,X-Y,Z-1/3->B:x,y,z	Middle domain in Argonaute homologs	Interaction Interface Pymol
e4f1nA4	B:x,y,z->A:X,Y,Z	Middle domain in Argonaute homologs	Interaction Interface Pymol