| UID: | 001381376 |
|---|---|
| Type: | Automatic domain |
| Parent: | e4f1nA4 |
| Range: | B:735-836,B:866-952 |
| PDB: | 4f1n |
| PDB Description: | KpAGO |
| UniProt: | A7TMA9 |
| Species: |
Structure of domain e4f1nB3
Domains in the same chain:
| e4f1nB5 | B:220-267,B:395-494,B:674-734 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e4f1nB4 | B:268-281,B:302-351,B:383-397 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e4f1nB6 | B:495-593,B:658-673 | SH3 | SH3 | SH3 |
| e4f1nB3 | B:735-836,B:866-952 | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs |
| e4f1nB2 | B:953-1251 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
Domains in the same PDB:
| e4f1nA2 | A:217-267,A:399-494,A:675-734 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e4f1nA1 | A:268-398 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e4f1nA3 | A:495-674 | SH3 | SH3 | SH3 |
| e4f1nA4 | A:735-952 | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs |
| e4f1nA5 | A:953-1251 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
| e4f1nB5 | B:220-267,B:395-494,B:674-734 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e4f1nB4 | B:268-281,B:302-351,B:383-397 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e4f1nB6 | B:495-593,B:658-673 | SH3 | SH3 | SH3 |
| e4f1nB3 | B:735-836,B:866-952 | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs |
| e4f1nB2 | B:953-1251 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
Structural contacts of domain e4f1nB3 of H-group "Middle domain in Argonaute homologs":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4f1nB3 | B:x,y,z->B:-Y+2,X-Y,Z-1/3 | Middle domain in Argonaute homologs | Interaction Interface Pymol |
| e4f1nB2 | B:-Y+2,X-Y,Z-1/3->B:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e4f1nB3 | B:-Y+2,X-Y,Z-1/3->B:x,y,z | Middle domain in Argonaute homologs | Interaction Interface Pymol |
| e4f1nA4 | B:x,y,z->A:X,Y,Z | Middle domain in Argonaute homologs | Interaction Interface Pymol |
