ECOD: domain e4f1nB5

Domain ID e4f1nB5

A: a+b two layers
X: Alpha-beta plaits
H: Argonaute, N-terminal domain
T: Argonaute, N-terminal domain
F: Unmapped domains

UID:	001381377
Type:	Automatic domain
Parent:	e4f1nA2
Range:	B:220-267,B:395-494,B:674-734
PDB:	4f1n
PDB Description:	KpAGO
UniProt:	A7TMA9
Species:

Domains in the same chain:

Download Pymol

e4f1nB5	B:220-267,B:395-494,B:674-734	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB4	B:268-281,B:302-351,B:383-397	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB6	B:495-593,B:658-673	SH3	SH3	SH3
e4f1nB3	B:735-836,B:866-952	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4f1nB2	B:953-1251	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e4f1nA2	A:217-267,A:399-494,A:675-734	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nA1	A:268-398	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nA3	A:495-674	SH3	SH3	SH3
e4f1nA4	A:735-952	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4f1nA5	A:953-1251	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4f1nB5	B:220-267,B:395-494,B:674-734	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB4	B:268-281,B:302-351,B:383-397	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4f1nB6	B:495-593,B:658-673	SH3	SH3	SH3
e4f1nB3	B:735-836,B:866-952	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4f1nB2	B:953-1251	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Structural contacts of domain e4f1nB5 of H-group "Argonaute, N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4f1nB5	B:x,y,z->B:-Y+2,X-Y,Z-1/3	Argonaute, N-terminal domain	Interaction Interface Pymol
e4f1nB6	B:x,y,z->B:-Y+2,X-Y,Z-1/3	SH3	Interaction Interface Pymol
e4f1nB2	B:-Y+2,X-Y,Z-1/3->B:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e4f1nB5	B:-Y+2,X-Y,Z-1/3->B:x,y,z	Argonaute, N-terminal domain	Interaction Interface Pymol
e4f1nA1	B:-Y+1,X-Y-1,Z-1/3->A:x,y,z	Argonaute, N-terminal domain	Interaction Interface Pymol
e4f1nA2	B:-Y+1,X-Y-1,Z-1/3->A:x,y,z	Argonaute, N-terminal domain	Interaction Interface Pymol