Domain ID e4f2rD9

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 001236842
Type: Automatic domain
Parent: e2hhvA3
Range: D:644-668,D:793-876
Ligands: CTP MG
PDB: 4f2r
PDB Description: DNA POLYMERASE
UniProt: Q5KWC1
Hsap BLAST neighbor: O75417
Species:

Structure of domain e4f2rD9

Domains in the same chain:

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e4f2rD10 D:294-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f2rD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f2rD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f2rD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4f2rA4 A:299-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f2rA2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f2rA3 A:643-667,A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f2rA1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4f2rD10 D:294-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f2rD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f2rD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f2rD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4f2rD9 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4f2rD11 D:x,y,z->D:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4f2rD10 D:x,y,z->D:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e4f2rA1 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4f2rA3 D:x,y,z->A:X-1/2,-Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4f2rA1 D:x,y,z->A:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol