ECOD: domain e4fdgE6

Domain ID e4fdgE6

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: Unmapped domains

UID:	001170285
Type:	Automatic domain
Parent:	e2vl6B4
Range:	E:136-190
Ligands:	ZN
PDB:	4fdg
PDB Description:	Minichromosome maintenance protein MCM
UniProt:	Q9UXG1
Species:	Sulfolobus solfataricus

Domain
In chain context
In PDB context

Structure of domain e4fdgE6

Domains in the same chain:

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Domains in the same PDB:

e4fdgA7	A:7-102	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e4fdgA2	A:103-135,A:191-264	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4fdgA6	A:136-190	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4fdgA4	A:265-507	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4fdgA5	A:508-598	Histone-like	Histone-related	AAA+ ATPase lid domain
e4fdgB4	B:7-102	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e4fdgB3	B:103-135,B:191-264	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4fdgB1	B:136-190	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4fdgB5	B:265-507	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4fdgB6	B:508-598	Histone-like	Histone-related	AAA+ ATPase lid domain
e4fdgC7	C:7-102	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e4fdgC2	C:103-135,C:191-264	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4fdgC6	C:136-190	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4fdgC4	C:265-507	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4fdgC5	C:508-598	Histone-like	Histone-related	AAA+ ATPase lid domain
e4fdgD7	D:7-102	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e4fdgD2	D:103-135,D:191-264	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4fdgD6	D:136-190	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4fdgD4	D:265-507	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4fdgD5	D:508-598	Histone-like	Histone-related	AAA+ ATPase lid domain
e4fdgE7	E:7-102	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e4fdgE2	E:103-135,E:191-264	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4fdgE6	E:136-190	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4fdgE4	E:265-507	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4fdgE5	E:508-598	Histone-like	Histone-related	AAA+ ATPase lid domain

Structural contacts of domain e4fdgE6 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4fdgC2	E:x,y,z->C:X,Y,Z	Nucleic acid-binding proteins	Interaction Interface Pymol