Domain ID e4ff1B2

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  • A: alpha arrays
  • X: inserted helical bundle subdomain in T7 RNA polymerase
  • H: inserted helical bundle subdomain in T7 RNA polymerase
  • T: inserted helical bundle subdomain in T7 RNA polymerase
  • F: vRNAP_plug
UID: 001837263
Type: Automatic domain
Parent: e2po4A3
Range: B:445-550
Ligands: PO4
PDB: 4ff1
PDB Description: Virion RNA polymerase
UniProt: Q859P9
Species: Escherichia phage N4

Structure of domain e4ff1B2

Domains in the same chain:

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e4ff1B5 B:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ff1B2 B:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e4ff1B1 B:551-597,B:918-1100 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ff1B4 B:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4ff1A4 A:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ff1A5 A:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e4ff1A3 A:551-597,A:918-1100 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ff1A2 A:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4ff1B5 B:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ff1B2 B:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e4ff1B1 B:551-597,B:918-1100 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ff1B4 B:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4ff1B2 of H-group "inserted helical bundle subdomain in T7 RNA polymerase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ff1A2 B:x,y,z->A:-X+1,Y-1/2,-Z+5/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4ff1A5 B:x,y,z->A:X,Y,Z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e4ff1A3 B:X-1,Y,Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol