ECOD: domain e4ff1B5

Domain ID e4ff1B5

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: vRNAP_dom_2

UID:	001837266
Type:	Automatic domain
Parent:	e2po4A4
Range:	B:325-444
PDB:	4ff1
PDB Description:	Virion RNA polymerase
UniProt:	Q859P9
Species:	Escherichia phage N4

Domains in the same chain:

Download Pymol

e4ff1B5	B:325-444	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ff1B2	B:445-550	inserted helical bundle subdomain in T7 RNA polymerase	inserted helical bundle subdomain in T7 RNA polymerase	inserted helical bundle subdomain in T7 RNA polymerase
e4ff1B1	B:551-597,B:918-1100	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ff1B4	B:598-917	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4ff1A4	A:325-444	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ff1A5	A:445-550	inserted helical bundle subdomain in T7 RNA polymerase	inserted helical bundle subdomain in T7 RNA polymerase	inserted helical bundle subdomain in T7 RNA polymerase
e4ff1A3	A:551-597,A:918-1100	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ff1A2	A:598-917	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4ff1B5	B:325-444	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ff1B2	B:445-550	inserted helical bundle subdomain in T7 RNA polymerase	inserted helical bundle subdomain in T7 RNA polymerase	inserted helical bundle subdomain in T7 RNA polymerase
e4ff1B1	B:551-597,B:918-1100	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ff1B4	B:598-917	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4ff1B5 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2po4A4	B:X-1,Y,Z->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e4ff1A4	B:X-1,Y,Z->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol