Domain ID e4fluA1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001653425
Type: Automatic domain
Parent: e1tgoA4
Range: A:348-448,A:503-610
Ligands: GOL
PDB: 4flu
PDB Description: Pyrococcus abyssi B family DNA polymerase
UniProt: P0CL76
Species: Pyrococcus abyssi

Structure of domain e4fluA1

Domains in the same chain:

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e4fluA3 A:-2-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fluA2 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fluA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fluA1 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fluA4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fluA6 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fluA3 A:-2-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fluA2 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fluA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fluA1 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fluA4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fluA6 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fluA1 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fluA1 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4fluA6 A:x,y,z->A:-X,Y-1/2,-Z+1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fluA2 A:-X,Y-1/2,-Z+1/2->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4fluA1 A:-X,Y-1/2,-Z+1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4fluA5 A:x,y,z->A:X-1,Y,Z Ribonuclease H-like Interaction Interface Pymol