Domain ID e4fluA5

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001653429
Type: Automatic domain
Parent: e1tgoA6
Range: A:134-347
Ligands: MES MG
PDB: 4flu
PDB Description: Pyrococcus abyssi B family DNA polymerase
UniProt: P0CL76
Hsap BLAST neighbor: P28340
Species: Pyrococcus abyssi

Structure of domain e4fluA5

Domains in the same chain:

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e4fluA3 A:-2-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fluA2 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fluA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fluA1 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fluA4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fluA6 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fluA3 A:-2-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fluA2 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fluA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fluA1 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fluA4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fluA6 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fluA5 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fluA2 A:X-1/2,-Y-1/2,-Z->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4fluA1 A:X-1,Y,Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol