Domain ID e4flyA5

Download files:
  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001617868
Type: Automatic domain
Parent: e1tgoA6
Range: A:134-347
Ligands: MG
PDB: 4fly
PDB Description: DNA polymerase 1
UniProt: P0CL77
Hsap BLAST neighbor: P28340
Species:

Structure of domain e4flyA5

Domains in the same chain:

Download Pymol

e4flyA4 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4flyA1 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4flyA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4flyA3 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4flyA6 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4flyA2 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4flyA4 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4flyA1 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4flyA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4flyA3 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4flyA6 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4flyA2 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4flyA5 of H-group "Ribonuclease H-like":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4flyA1 A:X-1/2,-Y+1/2,-Z->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4flyA3 A:X-1,Y,Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol