Domain ID e4fxdA6

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 001630666
Type: Automatic domain
Parent: e4q5vA4
Range: A:1073-1242
PDB: 4fxd
PDB Description: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A
UniProt: P13382
Hsap BLAST neighbor: P09884
Species:

Structure of domain e4fxdA6

Domains in the same chain:

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e4fxdA5 A:351-389,A:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fxdA1 A:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fxdA3 A:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fxdA2 A:848-903,A:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fxdA4 A:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fxdA6 A:1073-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fxdA5 A:351-389,A:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fxdA1 A:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fxdA3 A:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fxdA2 A:848-903,A:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fxdA4 A:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fxdA6 A:1073-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e4fxdB2 B:351-389,B:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fxdB4 B:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fxdB5 B:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fxdB1 B:848-903,B:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fxdB6 B:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fxdB3 B:1073-1132,B:1167-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fxdA6 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fxdB5 A:X-1,Y-1,Z+1->B:x,y,z Ribonuclease H-like Interaction Interface Pymol