Domain ID e4fxdB2

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: DNA_pol_B_exo1
UID: 001710543
Type: Automatic domain
Parent: e4q5vA6
Range: B:351-389,B:480-531
PDB: 4fxd
PDB Description: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A
UniProt: P13382
Species:

Structure of domain e4fxdB2

Domains in the same chain:

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e4fxdB2 B:351-389,B:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fxdB4 B:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fxdB5 B:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fxdB1 B:848-903,B:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fxdB6 B:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fxdB3 B:1073-1132,B:1167-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fxdA5 A:351-389,A:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fxdA1 A:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fxdA3 A:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fxdA2 A:848-903,A:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fxdA4 A:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fxdA6 A:1073-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e4fxdB2 B:351-389,B:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fxdB4 B:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fxdB5 B:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fxdB1 B:848-903,B:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fxdB6 B:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fxdB3 B:1073-1132,B:1167-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fxdB2 of H-group "Nucleic acid-binding proteins":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fxdA1 B:x,y,z->A:X,Y,Z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4fxdA4 B:x,y,z->A:X,Y-1,Z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fxdA5 B:x,y,z->A:X,Y-1,Z Nucleic acid-binding proteins Interaction Interface Pymol