ECOD: domain e4g7hD21

Domain ID e4g7hD21

A: a+b complex topology
X: second helical domain in RNA-polymerase beta-prime subunit
H: second helical domain in RNA-polymerase beta-prime subunit
T: second helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5,RNA_pol_Rpb1_4

UID:	001161966
Type:	Automatic domain
Parent:	e1twfA10
Range:	D:949-1109
PDB:	4g7h
PDB Description:	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'
UniProt:	Q8RQE8
Hsap BLAST neighbor:	P24928
Species:

Domains in the same chain:

Download Pymol

e4g7hD20	D:3-165,D:449-609	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4g7hD22	D:166-207,D:390-395	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hD1	D:208-215,D:341-389	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hD26	D:216-340	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Duplicated hybrid motif
e4g7hD25	D:396-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hD2	D:610-653,D:697-777	cradle loop barrel	RIFT-related	double psi
e4g7hD24	D:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4g7hD23	D:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4g7hD21	D:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4g7hD28	D:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4g7hD27	D:1201-1269,D:1331-1502	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4g7hD3	D:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Domains in the same PDB:

Structural contacts of domain e4g7hD21 of H-group "second helical domain in RNA-polymerase beta-prime subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1twfA10	D:x,y,z->C:X,Y,Z	second helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4g7hC7	D:x,y,z->C:X,Y,Z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4g7hC9	D:x,y,z->C:X,Y,Z	RIFT-related	Interaction Interface Pymol
e4g7hC6	D:x,y,z->C:X,Y,Z	barrel domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4g7hD27	D:x,y,z->D:X,Y-1,Z	central helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol

e4g7hA4	A:4-49,A:173-229	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4g7hA3	A:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4g7hB2	B:7-49,B:173-228	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4g7hB1	B:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4g7hC1	C:1-141,C:331-457	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4g7hC10	C:142-330	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4g7hC6	C:465-598	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4g7hC3	C:599-669	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hC9	C:664-700,C:827-999	cradle loop barrel	RIFT-related	double psi
e4g7hC8	C:699-832	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hC7	C:1006-1118	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4g7hD20	D:3-165,D:449-609	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4g7hD22	D:166-207,D:390-395	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hD1	D:208-215,D:341-389	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hD26	D:216-340	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Duplicated hybrid motif
e4g7hD25	D:396-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hD2	D:610-653,D:697-777	cradle loop barrel	RIFT-related	double psi
e4g7hD24	D:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4g7hD23	D:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4g7hD21	D:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4g7hD28	D:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4g7hD27	D:1201-1269,D:1331-1502	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4g7hD3	D:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hE1	E:2-95	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e4g7hF4	F:78-257	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e4g7hF6	F:258-317	HTH	HTH	tri-helical
e4g7hF5	F:318-423	HTH	HTH	tri-helical
e4g7hK3	K:4-49,K:173-229	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4g7hK2	K:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4g7hL1	L:4-49,L:173-228	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4g7hL2	L:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4g7hM4	M:1-141,M:331-457	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4g7hM10	M:142-330	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4g7hM6	M:458-591	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4g7hM3	M:592-662	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hM9	M:664-700,M:827-999	cradle loop barrel	RIFT-related	double psi
e4g7hM8	M:699-832	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hM7	M:999-1111	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4g7hN5	N:3-165,N:449-609	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4g7hN12	N:166-207,N:390-395	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hN1	N:208-215,N:341-389	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hN17	N:216-340	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Duplicated hybrid motif
e4g7hN16	N:396-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hN2	N:610-653,N:697-777	cradle loop barrel	RIFT-related	double psi
e4g7hN15	N:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4g7hN14	N:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4g7hN9	N:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4g7hN19	N:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4g7hN18	N:1201-1269,N:1331-1502	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4g7hN3	N:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4g7hO1	O:1-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e4g7hP3	P:77-257	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e4g7hP5	P:258-317	HTH	HTH	tri-helical
e4g7hP4	P:318-423	HTH	HTH	tri-helical