Domain ID e4gd1E1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000153365
Type: Automatic domain
Parent: e1pkpA2
Range: E:78-158
PDB: 4gd1
PDB Description:
Species:

Structure of domain e4gd1E1

Domains in the same chain:

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e4gd1E2 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4gd1E1 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4gd1C1 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4gd1C2 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4gd1E2 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4gd1E1 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gd1F1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4gd1G1 G:1-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4gd1H1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4gd1H2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4gd1J1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4gd1K1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4gd1L1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4gd1N1 N:1-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4gd1O1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4gd1P1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4gd1R1 R:19-73 HTH HTH tri-helical
e4gd1T1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4gd1Y1 Y:2-184 RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF

Structural contacts of domain e4gd1E1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4gd1H1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4gd1H2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol