ECOD: domain e4gd2R1

Domain ID e4gd2R1

A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: Ribosomal_S18

UID:	000985437
Type:	Automatic domain
Parent:	e2uubR1
Range:	R:19-73
PDB:	4gd2
PDB Description:
Species:

Domain
In chain context
In PDB context

Structure of domain e4gd2R1

Domains in the same chain:

Download Pymol

e4gd2R1	R:19-73	HTH	HTH	tri-helical

Domains in the same PDB:

e4gd2C2	C:1-105	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e4gd2C1	C:106-206	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e4gd2E4	E:9-76	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e4gd2E3	E:77-158	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4gd2F1	F:1-100	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e4gd2G1	G:1-151	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e4gd2H1	H:1-63	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e4gd2H2	H:64-128	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e4gd2J1	J:5-102	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e4gd2K1	K:12-116	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4gd2L1	L:1-122	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4gd2N1	N:1-96	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4gd2O1	O:1-87	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e4gd2P1	P:1-82	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e4gd2R1	R:19-73	HTH	HTH	tri-helical
e4gd2T1	T:2-84	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e4gd2R1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4gd2F1	R:x,y,z->F:X,Y,Z	Ribosomal protein S6	Interaction Interface Pymol
e4gd2K1	R:x,y,z->K:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol