Domain ID e4gfhF4

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: DNA_gyraseB
UID: 001710590
Type: Automatic domain
Parent: e1ei1A1
Range: F:246-406
Ligands: ANP
PDB: 4gfh
PDB Description: DNA topoisomerase 2
UniProt: P06786
Hsap BLAST neighbor: Q02880
Species:

Structure of domain e4gfhF4

Domains in the same chain:

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e4gfhF1 F:7-245 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e4gfhF4 F:246-406 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gfhF7 F:419-693 HAD domain-like HAD domain-related Toprim domain
e4gfhF6 F:694-822 HTH HTH winged
e4gfhF3 F:823-988 a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase
e4gfhF5 F:989-1070,F:1107-1177 alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase

Domains in the same PDB:

e4gfhA5 A:7-245 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e4gfhA3 A:246-408 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gfhA6 A:419-693 HAD domain-like HAD domain-related Toprim domain
e4gfhA4 A:694-822 HTH HTH winged
e4gfhA2 A:823-988 a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase
e4gfhA1 A:989-1070,A:1107-1177 alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase
e4gfhF1 F:7-245 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e4gfhF4 F:246-406 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gfhF7 F:419-693 HAD domain-like HAD domain-related Toprim domain
e4gfhF6 F:694-822 HTH HTH winged
e4gfhF3 F:823-988 a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase
e4gfhF5 F:989-1070,F:1107-1177 alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase

Structural contacts of domain e4gfhF4 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ei1A1 F:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ei1A1 F:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ei1A1 F:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ei1A1 F:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ei1A1 F:X-1/2,-Y+1/2,-Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol