ECOD: domain e4gfhF5

Domain ID e4gfhF5

A: alpha bundles
X: alpha-helical domain in type II DNA topoisomerase
H: alpha-helical domain in type II DNA topoisomerase
T: alpha-helical domain in type II DNA topoisomerase
F: DNA_topoisoIV

UID:	001710591
Type:	Automatic domain
Parent:	e1bjtA5
Range:	F:989-1070,F:1107-1177
PDB:	4gfh
PDB Description:	DNA topoisomerase 2
UniProt:	P06786
Hsap BLAST neighbor:	Q02880
Species:

Domains in the same chain:

Download Pymol

e4gfhF1	F:7-245	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e4gfhF4	F:246-406	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4gfhF7	F:419-693	HAD domain-like	HAD domain-related	Toprim domain
e4gfhF6	F:694-822	HTH	HTH	winged
e4gfhF3	F:823-988	a+b domain in type II DNA topoisomerase	a+b domain in type II DNA topoisomerase	a+b domain in type II DNA topoisomerase
e4gfhF5	F:989-1070,F:1107-1177	alpha-helical domain in type II DNA topoisomerase	alpha-helical domain in type II DNA topoisomerase	alpha-helical domain in type II DNA topoisomerase

Domains in the same PDB:

e4gfhA5	A:7-245	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e4gfhA3	A:246-408	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4gfhA6	A:419-693	HAD domain-like	HAD domain-related	Toprim domain
e4gfhA4	A:694-822	HTH	HTH	winged
e4gfhA2	A:823-988	a+b domain in type II DNA topoisomerase	a+b domain in type II DNA topoisomerase	a+b domain in type II DNA topoisomerase
e4gfhA1	A:989-1070,A:1107-1177	alpha-helical domain in type II DNA topoisomerase	alpha-helical domain in type II DNA topoisomerase	alpha-helical domain in type II DNA topoisomerase
e4gfhF1	F:7-245	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e4gfhF4	F:246-406	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4gfhF7	F:419-693	HAD domain-like	HAD domain-related	Toprim domain
e4gfhF6	F:694-822	HTH	HTH	winged
e4gfhF3	F:823-988	a+b domain in type II DNA topoisomerase	a+b domain in type II DNA topoisomerase	a+b domain in type II DNA topoisomerase
e4gfhF5	F:989-1070,F:1107-1177	alpha-helical domain in type II DNA topoisomerase	alpha-helical domain in type II DNA topoisomerase	alpha-helical domain in type II DNA topoisomerase

Structural contacts of domain e4gfhF5 of H-group "alpha-helical domain in type II DNA topoisomerase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1bjtA5	F:x,y,z->A:X,Y,Z	alpha-helical domain in type II DNA topoisomerase	Interaction Interface Pymol
e1bjtA5	F:x,y,z->A:X,Y,Z	alpha-helical domain in type II DNA topoisomerase	Interaction Interface Pymol
e1bjtA5	F:x,y,z->A:-X-1/2,-Y,Z-1/2	alpha-helical domain in type II DNA topoisomerase	Interaction Interface Pymol
e1bjtA5	F:x,y,z->F:-X-1/2,-Y,Z-1/2	alpha-helical domain in type II DNA topoisomerase	Interaction Interface Pymol