Domain ID e4gkjL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001017037
Type: Automatic domain
Parent: e2uubL1
Range: L:5-128
PDB: 4gkj
PDB Description: 30S ribosomal protein S12
UniProt: Q5SHN3
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4gkjL1

Domains in the same chain:

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e4gkjL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4gkjB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4gkjC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4gkjC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4gkjD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4gkjE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4gkjE2 E:74-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gkjF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4gkjG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4gkjH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4gkjH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4gkjI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gkjJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4gkjK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4gkjL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4gkjM1 M:2-126 HhH/H2TH H2TH H2TH
e4gkjN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4gkjO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4gkjP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4gkjQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4gkjR1 R:19-88 HTH HTH tri-helical
e4gkjS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4gkjT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4gkjL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4gkjQ1 L:X,Y,Z->Q:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4gkjH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol