Domain ID e4gkkL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001017036
Type: Automatic domain
Parent: e2uubL1
Range: L:5-128
Ligands: MG
PDB: 4gkk
PDB Description: 30S ribosomal protein S12
UniProt: Q5SHN3
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4gkkL1

Domains in the same chain:

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e4gkkL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4gkkB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4gkkC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4gkkC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4gkkD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4gkkE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4gkkE2 E:74-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gkkF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4gkkG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4gkkH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4gkkH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4gkkI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4gkkJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4gkkK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4gkkL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4gkkM1 M:2-126 HhH/H2TH H2TH H2TH
e4gkkN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4gkkO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4gkkP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4gkkQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4gkkR1 R:19-88 HTH HTH tri-helical
e4gkkS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4gkkT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4gkkL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4gkkQ1 L:X,Y,Z->Q:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4gkkH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol